MIMIC Implementation Guide
1.3.0 - Draft

MIMIC Implementation Guide - Local Development build (v1.3.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

: MIMIC Observation Lab interpretation Value Set - TTL Representation

Active as of 2024-02-08

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ValueSet ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "mimic-micro-interpretation"] ; # 
  fhir:text [
fhir:status [ fhir:v "extensions" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><ul><li>Include these codes as defined in <a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v3-ObservationInterpretation.html\"><code>http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v3-ObservationInterpretation.html#v3-ObservationInterpretation-IE\">IE</a></td><td>Insufficient evidence</td><td>There is insufficient evidence that the species in question is a good target for therapy with the drug. A categorical interpretation is not possible.<br/><br/>\\[Note: A MIC with &quot;IE&quot; and/or a comment may be reported (without an accompanying S, I or R-categorization).\\]</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v3-ObservationInterpretation.html#v3-ObservationInterpretation-IND\">IND</a></td><td>Indeterminate</td><td>The specified component / analyte, organism or clinical sign could neither be declared positive / negative nor detected / not detected by the performed test or procedure.<br/><br/>*Usage Note:* For example, if the specimen was degraded, poorly processed, or was missing the required anatomic structures, then &quot;indeterminate&quot; (i.e. &quot;cannot be determined&quot;) is the appropriate response, not &quot;equivocal&quot;.</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v3-ObservationInterpretation.html#v3-ObservationInterpretation-R\">R</a></td><td>Resistant</td><td>Bacterial strain inhibited in vitro by a concentration of an antimicrobial agent that is associated with a high likelihood of therapeutic failure. Reference: CLSI (http://www.clsi.org/Content/NavigationMenu/Resources/HarmonizedTerminologyDatabase/Harmonized\\_Terminolo.htm) Projects: ISO 20776-1, ISO 20776-2<br/><br/>\\[Note 1: Bacterial strains are categorized as resistant by applying the appropriate breakpoints in a defined phenotypic test system.\\]<br/><br/>\\[Note 2: This breakpoint can be altered due to changes in circumstances (e.g., changes in commonly used drug dosages, emergence of new resistance mechanisms).\\]</td></tr><tr><td><a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-v3-ObservationInterpretation.html#v3-ObservationInterpretation-S\">S</a></td><td>Susceptible</td><td>Bacterial strain inhibited by in vitro concentration of an antimicrobial agent that is associated with a high likelihood of therapeutic success. Reference: CLSI (http://www.clsi.org/Content/NavigationMenu/Resources/HarmonizedTerminologyDatabase/Harmonized\\_Terminolo.htm) Synonym (earlier term): Sensitive Projects: ISO 20776-1, ISO 20776-2<br/><br/>\\[Note 1: Bacterial strains are categorized as susceptible by applying the appropriate breakpoints in a defined phenotypic system.\\]<br/><br/>\\[Note 2: This breakpoint can be altered due to changes in circumstances (e.g., changes in commonly used drug dosages, emergence of new resistance mechanisms).\\]</td></tr></table></li></ul></div>"
  ] ; # 
  fhir:url [ fhir:v "http://mimic.mit.edu/fhir/mimic/ValueSet/mimic-micro-interpretation"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "1.3.0"] ; # 
  fhir:name [ fhir:v "MimicMicroInterpretation"] ; # 
  fhir:title [ fhir:v "MIMIC Observation Lab interpretation Value Set"] ; # 
  fhir:status [ fhir:v "active"] ; # 
  fhir:date [ fhir:v "2024-02-08T11:07:36-05:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "KinD Lab"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "KinD Lab" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://fhir.kindlab.sickkids.ca" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Selected codes from ObservationInterpretation that represent interpretations in MIMIC."] ; # 
  fhir:compose [
    ( fhir:include [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation"^^xsd:anyURI ] ;
      ( fhir:concept [
fhir:code [ fhir:v "IE" ] ;
fhir:display [ fhir:v "Insufficient evidence" ]       ] [
fhir:code [ fhir:v "IND" ] ;
fhir:display [ fhir:v "Indeterminate" ]       ] [
fhir:code [ fhir:v "R" ] ;
fhir:display [ fhir:v "Resistant" ]       ] [
fhir:code [ fhir:v "S" ] ;
fhir:display [ fhir:v "Susceptible" ]       ] )     ] )
  ] . #