MIMIC Implementation Guide
1.3.0 - Draft

MIMIC Implementation Guide - Local Development build (v1.3.0) built by the FHIR (HL7® FHIR® Standard) Build Tools. See the Directory of published versions

CodeSystem: MimicMicrobiologyTest

Official URL: http://mimic.mit.edu/fhir/mimic/CodeSystem/mimic-microbiology-test Version: 1.3.0
Draft as of 2022-09-21 Computable Name: MimicMicrobiologyTest

The microbiology test completed in MIMIC

This Code system is referenced in the content logical definition of the following value sets:

This code system http://mimic.mit.edu/fhir/mimic/CodeSystem/mimic-microbiology-test defines the following codes:

CodeDisplay
90212 CLOSTRIDIUM DIFFICILE TOXIN A & B TEST
90054 IMMUNOFLUORESCENT TEST FOR PNEUMOCYSTIS CARINII
90261 ANAEROBIC BOTTLE
90135 EPSTEIN-BARR VIRUS EBNA IgG AB
90241 POTASSIUM HYDROXIDE PREPARATION
90137 QUANTITATIVE RPR
90189 MRSA SCREEN
90218 Carbapenemase Resistant Enterobacteriaceae Screen
90042 TREPONEMAL ANTIBODY TEST
90179 POTASSIUM HYDROXIDE PREPARATION (HAIR/SKIN/NAILS)
90078 CHROMOSOME ANALYSIS-FLUID
90106 MICROSPORIDIA STAIN
90168 DIRECT INFLUENZA B ANTIGEN TEST
90184 STEM CELL - ANAEROBIC BOTTLE
90043 POST MORTEM MYCOLOGY CULTURE
90066 TISSUE CULTURE-LYMPHOCYTE
90232 Staph aureus Preop PCR
90249 CRYPTOCOCCAL ANTIGEN
90121 CYCLOSPORA STAIN
90193 voided
90192 CMV Viral Load
90075 CHROMOSOME ANALYSIS-BLOOD
90158 R/O GC Only
90268 FLUID CULTURE
90061 BRUCELLA BLOOD CULTURE
90172 HCV GENOTYPE
90170 FISH ANALYSIS, 3-5 CELLS
90090 POST-MORTEM VIRAL CULTURE
90185 SMEAR FOR BACTERIAL VAGINOSIS
90210 Malaria Antigen Test
90226 RPR w/check for Prozone
90203 Aerobic Bottle Gram Stain
90161 TRICHOMONAS SALINE PREP
90254 RUBELLA IgG SEROLOGY
90050 GRAM STAIN- R/O THRUSH
90230 Stool Hold Request
90116 Chlamydia trachomatis, Nucleic Acid Probe, with Amplification
90065 STOOL SMEAR FOR POLYMORPHONUCLEAR LEUKOCYTES
90272 TISSUE
90093 ANAEROBIC BOTTLE
90191 MUMPS IgG ANTIBODY
90173 Acid Fast Stain for Cryptosporidium
90148 Cryopreservation - Cells
90202 Blood Culture, Neonate
90269 FUNGAL CULTURE
90095 VARICELLA-ZOSTER CULTURE
90046 WOUND CULTURE
90267 FECAL CULTURE
90243 CAMPYLOBACTER CULTURE
90136 CMV IgM ANTIBODY
90055 RESPIRATORY CULTURE
90215 M. furfur Blood Culture
90265 BLOOD/FUNGAL CULTURE
90071 CHROMOSOME ANALYSIS-CVS
90163 INTERPHASE FISH ANALYSIS, 25-99 CELLS
90270 GRAM STAIN
90124 CVS NEEDLE ASPIRATION EVALUATION
90164 INTERPHASE FISH ANALYSIS, 100-300 CELLS
90186 YEAST VAGINITIS CULTURE
90099 NOCARDIA CULTURE
90264 BLOOD/AFB CULTURE
90181 O&P MACROSCOPIC EXAM - ARTHROPOD
90152 Tissue Culture - Neoplastic Blood
90119 HELICOBACTER PYLORI ANTIBODY TEST
90205 Fluid Culture in Bottles
90074 FOCUSED ANALYSIS
90209 Pediatric Bottle Gram Stain
90206 Blood Culture, Post Mortem
90115 R/O VANCOMYCIN RESISTANT ENTEROCOCCUS
90091 VARICELLA-ZOSTER IgG SEROLOGY
90224 Cipro Resistant Screen
90109 M.FURFUR CULTURE
90072 CHROMOSOME ANALYSIS-TISSUE
90260 AEROBIC BOTTLE
90236 Anaerobic culture, Prosthetic Joint Fluid
90201 Blood Culture, Routine
90233 C. difficile Toxin antigen assay
90182 STEM CELL - AEROBIC BOTTLE
90222 MTB Direct Amplification
90130 R/O Beta Strep Group A
90128 Legionella Urinary Antigen
90174 Concentration and Stain for Giardia
90214 Respiratory Viral Culture
90140 QUANTITATIVE CRYPTOCOCCAL ANTIGEN
90096 DIRECT ANTIGEN TEST FOR VARICELLA-ZOSTER VIRUS
90039 URINE CULTURE
90144 TOXOPLASMA IgG ANTIBODY
90207 Stem Cell Aer/Ana Culture
90086 FECAL CULTURE - R/O YERSINIA
90190 Tissue culture for additional cells
90068 TISSUE CULTURE-FLUID
90225 ED Gram Stain for Yeast
90255 VIRAL CULTURE: R/O CYTOMEGALOVIRUS
90157 DIRECT RSV ANTIGEN TEST
90079 TISSUE CULTURE-CVS
90049 BRUCELLA CULTURE
90259 SCOTCH TAPE PREP/PADDLE
90150 MOLECULAR CYTOGENETICS - DNA PROBE
90219 CRE/ESBL/AMP-C Screening
90104 Direct Antigen Test for Herpes Simplex Virus Types 1 & 2
90238 POST-MORTEM ACID-FAST CULTURE
90160 Cryptosporidium/Giardia (DFA)
90194 R/O Group B Strep - Penicillin Allergy
90053 CYTOMEGALOVIRUS EARLY ANTIGEN TEST (SHELL VIAL METHOD)
90195 Reflex HCV Qual PCR
90220 Deparaffinization, Lysis of Cells
90131 ASO TITER
90105 Respiratory Viral Antigen Screen
90235 REFLEX URINE CULTURE
90154 BARTONELLA BLOOD CULTURE
90083 FECAL CULTURE - R/O VIBRIO
90169 GEN-PROBE AMPLIFIED M. TUBERCULOSIS DIRECT TEST (MTD)
90175 HIV-1 Viral Load/Ultrasensitive
90087 FECAL CULTURE - R/O E.COLI 0157:H7
90171 FISH ANALYSIS, 10-30 CELLS
90245 ANAEROBIC CULTURE
90097 R/O GROUP B BETA STREP
90200 STAT OR Gram Stain
90067 TISSUE CULTURE-AMNIOTIC FLUID
90252 VIRAL CULTURE
90076 CHROMOSOME ANALYSIS-AMNIOTIC FLUID
90155 MOLECULAR CYTOGENETICS-DNA Probe
90134 EPSTEIN-BARR VIRUS VCA-IgM AB
90256 VIRAL CULTURE: R/O HERPES SIMPLEX VIRUS
90221 C. difficile PCR
90162 ADDITIONAL CELLS COUNTED
90038 GENITAL CULTURE
90198 Staph aureus Screen
90216 Malassezia furfur Culture
90159 POSTMORTEM CULTURE
90107 Respiratory Virus Identification
90117 ANAEROBIC BOTTLE
90101 EPSTEIN-BARR VIRUS VCA-IgG AB
90227 Sonication culture, prosthetic joint
90080 TISSUE CULTURE-TISSUE
90229 Lyme IgM
90211 Rubella IgG/IgM Antibody
90123 HCV VIRAL LOAD
90258 AEROBIC BOTTLE
90143 CMV IgG ANTIBODY
90250 OVA + PARASITES
90239 POST-MORTEM DIRECT ACID-FAST STAIN
90098 SWAB- R/O YEAST
90178 FUNGAL CULTURE (HAIR/SKIN/NAILS)
90246 ACID FAST SMEAR
90142 VIRAL CULTURE: R/O CYTOMEGALOVIRUS
90253 CLOSTRIDIUM DIFFICILE TOXIN ASSAY
90208 Myco-F Bottle Gram Stain
90153 Additional Cells and Karyotype
90151 Tissue Culture-Bone Marrow
90204 Anaerobic Bottle Gram Stain
90111 CHROMOSOME ANALYSIS-BONE MARROW
90133 MONOSPOT
90188 NEISSERIA GONORRHOEAE (GC), NUCLEIC ACID PROBE, WITH AMPLIFICATION
90177 HBV Viral Load
90156 DIRECT INFLUENZA A ANTIGEN TEST
90112 MODIFIED ACID-FAST STAIN FOR NOCARDIA
90213 Enterovirus Culture
90231 Swab - R/O Yeast - IC
90167 ISOLATE FOR MIC
90129 ASO Screen
90059 LEGIONELLA CULTURE
90228 Lyme IgG
90113 URINE-GRAM STAIN - UNSPUN
90240 ACID FAST CULTURE
90248 RAPID PLASMA REAGIN TEST
90126 TOXOPLASMA IgM ANTIBODY
90088 CHROMOSOME ANALYSIS - ADDITIONAL KARYOTYPE
90166 Problem
90187 GENITAL CULTURE FOR TOXIC SHOCK
90199 Immunofluorescent test for Pneumocystis jirovecii (carinii)
90127 RUBEOLA ANTIBODY, IgG
90180 O&P MACROSCOPIC EXAM - WORM
90262 CHLAMYDIA CULTURE
90092 AEROBIC BOTTLE
90146 CHROMOSOME ANALYSIS-NEOPLASTIC BLOOD
90132 LYME SEROLOGY